11. An in vitro translation system capable of incorporating ~8 amino acids was programmed to translate a single mRNA that codes for an alanine-rich (35% alanine with uniform distribution of […]
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Chromatin Immunoprecipitation (ChIP) Assay
10. A reporter cell line with stably integrated retroviral promoter-luciferase construct was transfected with an expression vector for a cellular protein. The protein seems to regulate the activation of retroviral […]
How to Identify Enhancer Sequences Using Reporter Constructs
9. A researcher wanted to identify the enhancer sequences of a newly discovered gene. Shown below are the relevant regions of some of the reporter constructs the researcher designed to […]
S1 Nuclease Mapping: Understanding Transcript Length and Start Sites
The data from an S1 nuclease mapping experiment for a transcript mfg1 using a 5′-end labelled probe are shown below. Following interpretations were made: A. The liver RNA is 500 […]
Interpreting Run-Off Transcription Assay Results: Specificity of Novel Sigma Factors for Promoters
7. Run off transcription assays were performed to establish the specificity of three novel sigma factors for their promoters. Result of the experiments are shown below: Following inferences were made […]
Interpreting EMSA Results: Understanding Protein-DNA and Protein-Protein Interactions in Gene Regulation
6. A researcher was working with three proteins, A, B and C which may have potential roles in gene expression. In order to validate the hypothesis, EMSA (electrophoretic mobility shift […]
Promoter Deletion Analysis To Identify Negative Regulatory Element
Deletion analysis of a promoter region of a gene was carried out to identify the regulatory elements in it. In the figure below, the filled boxes denote the areas of […]
Positive and Negative Regulatory Elements in Promoters by Luciferase Reporter Deletion Constructs
In order to identify the regulatory regions of a novel promoter sequence shown above, four 150 bp deletion constructs were made in a luciferase reporter system as indicated above in […]
Promoter Deletion Analysis: Identifying Activator and Repressor Binding Sites in Gene Regulation
3. A promoter deletion study was done in order to determine the binding sites for a transcription factor on the promoter, which is activated on treatment with the drug ‘X’. […]
Co-immunoprecipitation: The Most Effective Method to Study Protein-Protein Interactions
Which of the following methods can be used to study protein-protein interactions? (1) Co-immunoprecipitation (2) Peptide mapping (3) Radiolabeling (4) Enzyme linked immunoassay Introduction Protein-protein interactions (PPIs) are fundamental to […]


