Understanding mRNA 5′ Capping | Role of Phosphates and CTD Phosphorylation in Cap Formation

5. Eukaryotic mRNAs have an enzymatic appended cap structure consisting of a 7-methylguanosine residue joined to the initial 5′ nucleotide of the transcripts. Given below are a few statements regarding capping.
A. Capping protects the mRNA from degradation by 5′ exoribonucleases.
B. During capping, the a-phosphate is released from the 5′-end of the nascent mRNA.
C. Phosphorylation mediated conformational change in carboxyl terminal domain (CTD) of RNA POI II enables its binding with capping enzymes.
D. During capping, a 5′ -5′ triphosphate bond is formed between the β-phosphate of the nascent mRNA and α-phosphate of GTP.
Which of the above statement(s) is/are INCORRECT?
(1) C only       (2) B only
(3) A and B     (4) C and D

Correct Answer:

(2) B only

Detailed Explanation:

  • Statement A:
    Correct. The 5′ cap protects mRNA from degradation by 5′ exonucleases by creating a unique 5′–5′ triphosphate linkage that blocks exonuclease access.

  • Statement B:
    Incorrect. During capping, the γ-phosphate (the outermost phosphate) is removed from the 5′ end of the nascent mRNA by an RNA triphosphatase. The α-phosphate remains attached to the mRNA. The guanylyltransferase then adds GMP to the diphosphate 5′ end, forming the 5′–5′ triphosphate linkage. Thus, the α-phosphate is not released.

  • Statement C:
    Correct. The phosphorylation of the CTD of RNA polymerase II, especially on serine residues, induces conformational changes that enable recruitment and binding of capping enzymes to the transcription complex, facilitating co-transcriptional capping47.

  • Statement D:
    Correct. The 5′ cap is formed by a 5′–5′ triphosphate bond between the β-phosphate of the nascent mRNA diphosphate end and the α-phosphate of GTP, catalyzed by guanylyltransferase.


Summary Table

Statement Description Correct/Incorrect Explanation
A Capping protects mRNA from 5′ exonucleases Correct Cap blocks 5′ exonucleases, stabilizing mRNA.
B α-phosphate is released from 5′ end during capping Incorrect γ-phosphate is removed; α-phosphate remains attached.
C CTD phosphorylation enables binding of capping enzymes Correct Phosphorylated CTD recruits capping enzymes co-transcriptionally.
D 5′–5′ triphosphate bond formed between β-phosphate of mRNA and α-phosphate of GTP Correct This unique linkage forms the cap structure.

Conclusion

The only incorrect statement is B. During mRNA capping, the γ-phosphate at the 5′ end of the nascent RNA is removed, not the α-phosphate. The α-phosphate remains part of the RNA backbone and participates in forming the 5′–5′ triphosphate linkage with GTP.

 

8 Comments
  • Suman bhakar
    June 4, 2025

    Done sir ✅

  • Prami Masih
    June 4, 2025

    Very nice explanation sir ji

  • Divya rani
    November 4, 2025

    Only B statement is wrong because the gamma phosphate pf 5′ end of nascent mRNA is released not alpha phosphate.

  • Manisha choudhary
    November 4, 2025

    During capping 5′(alpha phosphate of G) -5′(beta phosphate m RNA ) bond formation hota h
    Option B is incorrect
    Gama phosphate of nascent m RNA relase hota h

  • Roopal Sharma
    November 4, 2025

    B option is wrong gama phosphate of 5′ end of nascent mrna is released not alpha p.

  • Heena Mahlawat
    November 4, 2025

    Only gamma phosphate is released not alpha phosphate f

  • Priti khandal
    November 7, 2025

    Only B statement is wrong

  • Sakshi Kanwar
    November 8, 2025

    During capping, the gamma -phosphate is released from the 5′-end of the nascent mRNA not aplha phosphate so option B is incorrect

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